SFB 870: Assembly and Function of Neuronal Circuits in Sensory Processing
Final Report Abstract
Throughout all three funding periods the overarching goal of the CRC 870 Assembly and Function of Neuronal Circuits was to narrow a fundamental gap in our knowledge of brains and brain function concerning on the one hand biophysical properties of singe cells, synaptic function, synaptic integration or action potential generation and, on the one hand, the complex functions of higher-order neuronal networks and brain structures (behavior, perception etc.). While we have reached a largely mechanistic understanding with respect to the former, it remains rather descriptive and correlational with respect to the latter. The focusing on the structure-function relation of sensory and motor systems framed the overarching conceptual approach to achieve this goal. Both, sensory and motor systems with a known functional significance allow for hypothesis driven scientific approach placing the mechanistic understanding of their development and plasticity as well as the neuronal computations they perform into the center of interest. The CRC’s approach was also intended to counterbalance the increasing number of screening approaches of other consortia. The CRC 870 was organized in three clusters of projects with A-clusters focusing on assembly and plasticity of neural circuits, B-projects on sensory and sensory-motor functions, Z-projects on the development of new experimental tools and their implementation in the consortium. In the course of the funding periods, research on sensorimotor processing, action potential generation and axonal transmission, myelination, reprogramming and regeneration in the circuits under investigation gained attention while in the third funding period, combining bottom-up and top-down approaches, the research focus was extended to include more the dynamics and context dependency of neuronal processing. Thus, many circuits have been described with unprecedented depth, and functional principles have been identified through a close interplay of models based on experimentally collected data and subsequent hypothesis-driven experiments. That this approach has indeed contributed to narrowing and partly even bridging the gap between the above-mentioned levels of observation (basal mechanistic vs. complex descriptive) is evidenced, for example, by new discoveries on the dynamics of sensory processing ("computations") that led to new and hitherto unexpected predictions on perception, which could then be confirmed psychophysically (including humans). The projects used a broad range of model organisms (drosophila, zebra fish, mouse, gerbil, rat, but also humans for psychophysics, as well as genetically manipulated animals), different sensory systems (olfactory, auditory, visual, vestibular pathways), state-of-the-art, and newly developed methods for circuit analysis. The consortium published far more than 300 original publications with more than half of them in highprofile journals.
Publications
-
Biocompatibility of a genetically encoded calcium indicator in a transgenic mouse model. Nature Communications, 3(1).
Direnberger, Stephan; Mues, Marsilius; Micale, Vincenzo; Wotjak, Carsten T.; Dietzel, Steffen; Schubert, Michael; Scharr, Andreas; Hassan, Sami; Wahl-Schott, Christian; Biel, Martin; Krishnamoorthy, Gurumoorthy & Griesbeck, Oliver
-
Gaze Stabilization by Efference Copy Signaling without Sensory Feedback during Vertebrate Locomotion. Current Biology, 22(18), 1649-1658.
Lambert, François M.; Combes, Denis; Simmers, John & Straka, Hans
-
A directional tuning map of Drosophila elementary motion detectors. Nature, 500(7461), 212-216.
Maisak, Matthew S.; Haag, Juergen; Ammer, Georg; Serbe, Etienne; Meier, Matthias; Leonhardt, Aljoscha; Schilling, Tabea; Bahl, Armin; Rubin, Gerald M.; Nern, Aljoscha; Dickson, Barry J.; Reiff, Dierk F.; Hopp, Elisabeth & Borst, Alexander
-
Adaptation in sound localization: from GABAB receptor–mediated synaptic modulation to perception. Nature Neuroscience, 16(12), 1840-1847.
Stange, Annette; Myoga, Michael H.; Lingner, Andrea; Ford, Marc C.; Alexandrova, Olga; Felmy, Felix; Pecka, Michael; Siveke, Ida & Grothe, Benedikt
-
Function of Dendritic Spines on Hippocampal Inhibitory Neurons. Cerebral Cortex, 24(12), 3142-3153.
Scheuss, V. & Bonhoeffer, T.
-
Trnp1 Regulates Expansion and Folding of the Mammalian Cerebral Cortex by Control of Radial Glial Fate. Cell, 153(3), 535-549.
Stahl, Ronny; Walcher, Tessa; De Juan, Romero Camino; Pilz, Gregor Alexander; Cappello, Silvia; Irmler, Martin; Sanz-Aquela, José Miguel; Beckers, Johannes; Blum, Robert; Borrell, Víctor & Götz, Magdalena
-
Glycinergic inhibition tunes coincidence detection in the auditory brainstem. Nature Communications, 5(1).
Myoga, Michael H.; Lehnert, Simon; Leibold, Christian; Felmy, Felix & Grothe, Benedikt
-
Multiparametric optical analysis of mitochondrial redox signals during neuronal physiology and pathology in vivo. Nature Medicine, 20(5), 555-560.
Breckwoldt, Michael O.; Pfister, Franz M. J.; Bradley, Peter M.; Marinković, Petar; Williams, Philip R.; Brill, Monika S.; Plomer, Barbara; Schmalz, Anja; St Clair, Daret K.; Naumann, Ronald; Griesbeck, Oliver; Schwarzländer, Markus; Godinho, Leanne; Bareyre, Florence M.; Dick, Tobias P.; Kerschensteiner, Martin & Misgeld, Thomas
-
NMDA Receptor-Dependent Multidendrite Ca 2+ Spikes Required for Hippocampal Burst Firing In Vivo. Neuron, 81(6), 1274-1281.
Grienberger, Christine; Chen, Xiaowei & Konnerth, Arthur
-
STIM1 Controls Neuronal Ca2+ Signaling, mGluR1-Dependent Synaptic Transmission, and Cerebellar Motor Behavior. Neuron, 82(3), 635-644.
Hartmann, Jana; Karl, Rosa M.; Alexander, Ryan P.D.; Adelsberger, Helmuth; Brill, Monika S.; Rühlmann, Charlotta; Ansel, Anna; Sakimura, Kenji; Baba, Yoshihiro; Kurosaki, Tomohiro; Misgeld, Thomas & Konnerth, Arthur
-
A Higher Brain Circuit for Immediate Integration of Conflicting Sensory Information in Drosophila. Current Biology, 25(17), 2203-2214.
Lewis, Laurence P.C.; Siju, K.P.; Aso, Yoshinori; Friedrich, Anja B.; Bulteel, Alexander J.B.; Rubin, Gerald M. & Grunwald, Kadow Ilona C.
-
Activity-Dependent Transmission and Integration Control the Timescales of Auditory Processing at an Inhibitory Synapse. Current Biology, 25(12), 1562-1572.
Ammer, Julian. J.; Siveke, Ida & Felmy, Felix
-
Live imaging of adult neural stem cell behavior in the intact and injured zebrafish brain. Science, 348(6236), 789-793.
Barbosa, Joana S.; Sanchez-Gonzalez, Rosario; Di Giaimo, Rossella; Baumgart, Emily Violette; Theis, Fabian J.; Götz, Magdalena & Ninkovic, Jovica
-
Neural Circuit to Integrate Opposing Motions in the Visual Field. Cell, 162(2), 351-362.
Mauss, Alex S.; Pankova, Katarina; Arenz, Alexander; Nern, Aljoscha; Rubin, Gerald M. & Borst, Alexander
-
Spinal corollary discharge modulates motion sensing during vertebrate locomotion. Nature Communications, 6(1).
Chagnaud, Boris P.; Banchi, Roberto; Simmers, John & Straka, Hans
-
Tuning of Ranvier node and internode properties in myelinated axons to adjust action potential timing. Nature Communications, 6(1).
Ford, Marc C.; Alexandrova, Olga; Cossell, Lee; Stange-Marten, Annette; Sinclair, James; Kopp-Scheinpflug, Conny; Pecka, Michael; Attwell, David & Grothe, Benedikt
-
Cell-specific restoration of stimulus preference after monocular deprivation in the visual cortex. Science, 352(6291), 1319-1322.
Rose, Tobias; Jaepel, Juliane; Hübener, Mark & Bonhoeffer, Tobias
-
Comprehensive Characterization of the Major Presynaptic Elements to the Drosophila OFF Motion Detector. Neuron, 89(4), 829-841.
Serbe, Etienne; Meier, Matthias; Leonhardt, Aljoscha & Borst, Alexander
-
Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum. Neuron, 90(3), 596-608.
Filosa, Alessandro; Barker, Alison J.; Dal Maschio, Marco & Baier, Herwig
-
G gene-deficient single-round rabies viruses for neuronal circuit analysis. Virus Research, 216, 41-54.
Ghanem, Alexander & Conzelmann, Karl-Klaus
-
Quantifying macromolecular interactions in living cells using FRET two-hybrid assays. Nature Protocols, 11(12), 2470-2498.
Butz, Elisabeth S.; Ben-Johny, Manu; Shen, Michael; Yang, Philemon S.; Sang, Lingjie; Biel, Martin; Yue, David T. & Wahl-Schott, Christian
-
Single-cell in vivo imaging of adult neural stem cells in the zebrafish telencephalon. Nature Protocols, 11(8), 1360-1370.
Barbosa, Joana S.; Di Giaimo, Rossella; Götz, Magdalena & Ninkovic, Jovica
-
Transplanted embryonic neurons integrate into adult neocortical circuits. Nature, 539(7628), 248-253.
Falkner, Susanne; Grade, Sofia; Dimou, Leda; Conzelmann, Karl-Klaus; Bonhoeffer, Tobias; Götz, Magdalena & Hübener, Mark
-
Input timing for spatial processing is precisely tuned via constant synaptic delays and myelination patterns in the auditory brainstem. Proceedings of the National Academy of Sciences, 114(24).
Stange-Marten, Annette; Nabel, Alisha L.; Sinclair, James L.; Fischl, Matthew; Alexandrova, Olga; Wohlfrom, Hilde; Kopp-Scheinpflug, Conny; Pecka, Michael & Grothe, Benedikt
-
Lateral geniculate neurons projecting to primary visual cortex show ocular dominance plasticity in adult mice. Nature Neuroscience, 20(12), 1708-1714.
Jaepel, Juliane; Hübener, Mark; Bonhoeffer, Tobias & Rose, Tobias
-
Linking Neurons to Network Function and Behavior by Two-Photon Holographic Optogenetics and Volumetric Imaging. Neuron, 94(4), 774-789.e5.
dal Maschio, Marco; Donovan, Joseph C.; Helmbrecht, Thomas O. & Baier, Herwig
-
Uncoupling of neurogenesis and differentiation during retinal development. The EMBO Journal, 36(9), 1134-1146.
Engerer, Peter; Suzuki, Sachihiro C.; Yoshimatsu, Takeshi; Chapouton, Prisca; Obeng, Nancy; Odermatt, Benjamin; Williams, Philip R.; Misgeld, Thomas & Godinho, Leanne
-
A biophysical mechanism for preferred direction enhancement in fly motion vision. PLOS Computational Biology, 14(6), e1006240.
Borst, Alexander
-
A novel concept for dynamic adjustment of auditory space. Scientific Reports, 8(1).
Lingner, A.; Pecka, M.; Leibold, C. & Grothe, B.
-
High-yield in vitro recordings from neurons functionally characterized in vivo. Nature Protocols, 13(6), 1275-1293.
Weiler, Simon; Bauer, Joel; Hübener, Mark; Bonhoeffer, Tobias; Rose, Tobias & Scheuss, Volker
-
Precisely timed inhibition facilitates action potential firing for spatial coding in the auditory brainstem. Nature Communications, 9(1).
Beiderbeck, Barbara; Myoga, Michael H.; Müller, Nicolas I. C.; Callan, Alexander R.; Friauf, Eckhard; Grothe, Benedikt & Pecka, Michael
-
A Neural Circuit Arbitrates between Persistence and Withdrawal in Hungry Drosophila. Neuron, 104(3), 544-558.e6.
Sayin, Sercan; De Backer, Jean-Francois; Siju, K.P.; Wosniack, Marina E.; Lewis, Laurence P.; Frisch, Lisa-Marie; Gansen, Benedikt; Schlegel, Philipp; Edmondson-Stait, Amelia; Sharifi, Nadiya; Fisher, Corey B.; Calle-Schuler, Steven A.; Lauritzen, J. Scott; Bock, Davi D.; Costa, Marta; Jefferis, Gregory S.X.E.; Gjorgjieva, Julijana & Grunwald, Kadow Ilona C.
-
Cooperative population coding facilitates efficient sound-source separability by adaptation to input statistics. PLOS Biology, 17(7), e3000150.
Gleiss, Helge; Encke, Jörg; Lingner, Andrea; Jennings, Todd R.; Brosel, Sonja; Kunz, Lars; Grothe, Benedikt & Pecka, Michael
-
Inducing Different Neuronal Subtypes from Astrocytes in the Injured Mouse Cerebral Cortex. Neuron, 103(6), 1086-1095.e5.
Mattugini, Nicola; Bocchi, Riccardo; Scheuss, Volker; Russo, Gianluca Luigi; Torper, Olof; Lao, Chu Lan & Götz, Magdalena
-
Two types of functionally distinct Ca2+ stores in hippocampal neurons. Nature Communications, 10(1).
Chen-Engerer, Hsing-Jung; Hartmann, Jana; Karl, Rosa Maria; Yang, Jun; Feske, Stefan & Konnerth, Arthur
-
Corticothalamic feedback sculpts visual spatial integration in mouse thalamus. Nature Neuroscience, 24(12), 1711-1720.
Born, Gregory; Schneider-Soupiadis, Felix A.; Erisken, Sinem; Vaiceliunaite, Agne; Lao, Chu Lan; Mobarhan, Milad H.; Spacek, Martin A.; Einevoll, Gaute T. & Busse, Laura
-
Mouse prefrontal cortex represents learned rules for categorization. Nature, 593(7859), 411-417.
Reinert, Sandra; Hübener, Mark; Bonhoeffer, Tobias & Goltstein, Pieter M.
-
Neural circuitry for stimulus selection in the zebrafish visual system. Neuron, 109(5), 805-822.e6.
Fernandes, António M.; Mearns, Duncan S.; Donovan, Joseph C.; Larsch, Johannes; Helmbrecht, Thomas O.; Kölsch, Yvonne; Laurell, Eva; Kawakami, Koichi; dal Maschio, Marco & Baier, Herwig
-
Oligodendrocyte precursor cells sculpt the visual system by regulating axonal remodeling. Nature Neuroscience, 25(3), 280-284.
Xiao, Yan; Petrucco, Luigi; Hoodless, Laura J.; Portugues, Ruben & Czopka, Tim
-
Orientation and direction tuning align with dendritic morphology and spatial connectivity in mouse visual cortex. Current Biology, 32(8), 1743-1753.e7.
Weiler, Simon; Guggiana, Nilo Drago; Bonhoeffer, Tobias; Hübener, Mark; Rose, Tobias & Scheuss, Volker
