Analysis of RNA editing trans-factors in plant mitochondria

• Applicant: Privatdozent Dr. Mizuki Takenaka
• Subject Area: Plant Genetics and Genomics
• Term: from 2011 to 2016
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 193481273

• Final Report Year: 2016

Final Report Abstract

No abstract available

Publications

• The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. Journal of Biological Chemistry, Vol. 286. 2011, pp. 21361-21371.
  Hammani, K., Takenaka, M., Tanz, S.K., Okuda, K., Shikanai, T., Brennicke, A., Small, I.
  (See online at https://dx.doi.org/10.1074/jbc.M111.230516)
• Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Proceedings of the National Academy of Sciences of the USA, Vol. 109. 2012, Issue 13, pp. 5104-5109.
  Takenaka, M., Zehrmann, A., Härtel, B., Kugelmann, M., Verbitskiy, D., Brennicke,A.
  (See online at https://doi.org/10.1073/pnas.1202452109)
• Using multiplex single-base Extension typing to screen for mutants defective in RNA editing. Nature Protocols, vol. 7. 2012, pp. 1931–1945.
  Takenaka, M., and Brennicke, A.
  (See online at https://doi.org/10.1038/nprot.2012.117)
• Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS ONE, Bol. 8. 2013, Issue 6: e65343.
  Takenaka, M., Zehrmann, A.,Brennicke, A., Graichen, K.
  (See online at https://doi.org/10.1371/journal.pone.0065343)
• RNA-Editing in plants and its evolution. Annual Review of Genetics, Vol. 47. 2013, pp. 335-352.
  Takenaka, M., Zehrmann, A., Verbitskiy, D., Häertel, B., Brennicke, A.
  (See online at https://doi.org/10.1146/annurev-genet-111212-133519)
• How Complex are the Editosomes in Plant Organelles? Molecular Plant, Vol. 7. 2014, Issue 4, pp. 582-585.
  Takenaka, M.
  (See online at https://doi.org/10.1093/mp/sst170)
• MEF13 requires MORF3 and MORF8 for RNA editing at eight targets in mitochondrial mRNAs in Arabidopsis thaliana. Molecular Plant, Vol. 8. 2015, Issue 10, pp. 1466-1477.
  Glass, F., Härtel, B., Zehrmann, A., Verbitskiy, D., Takenaka, M.
  (See online at https://doi.org/10.1016/j.molp.2015.05.008)
• Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana. Journal of Biological Chemistry, Vol. 290. 2090, pp. 6445-6456.
  Zehrmann, A., Härtel, B., Glass, F., Bayer-Csaszar, E., Obata, T., Meyer, E., Brennicke, A., Takenaka, M.
  (See online at https://doi.org/10.1074/jbc.M114.602086)
• A PPR protein in the PLS subfamily stabilizes the 5’-end of processed rpl16 mRNAs in maize chloroplasts. Nucleic Acids Research, Vol. 44. 2016, Issue 9, pp. 4278–4288.
  Hammani, K., Takenaka M., Miranda, R., Barkan, A.
  (See online at https://doi.org/10.1093/nar/gkw270)