Leveraging the genome sequences of two Arabidopsis relatives for evolutionary and ecological genomics (ERA-PG 058)

• Applicants: Dr. Barbara Neuffer; Professor Detlef Weigel, Ph.D.
• Subject Area: Plant Genetics and Genomics
• Term: from 2007 to 2010
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 35962009

• Final Report Year: 2012

No abstract available

Publications

• 2008. Transmission ratio distortion in Arabidopsis lyrata: effects of population divergence and the S-locus Heredity, Vol. 100. 2008, pp. 71-78.
  Leppälä, J.; Bechsgaard, J. S.; Schierup, M. H. & Savolainen, O.
  
• 2008. Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection. PLoS Genetics, Vol. 4.2008, Issue 8: e1000168.
  Castric, Vincent; Bechsgaard, Jesper; Schierup, Mikkel H. & Vekemans, Xavier
  
• 2009. Expression of Distinct Self-Incompatibility Specificities in Arabidopsis thaliana. Genetics, Vol. 182. 2009, Issue 4, pp. 1313-1321.
  Boggs, Nathan A.; Dwyer, Kathleen G.; Shah, Paurush; Mcculloch, Amanda A.; Bechsgaard, Jesper; Schierup, Mikkel H.; Nasrallah, Mikhail E. & Nasrallah, June B.
  
• 2009. Local adaptation in European populations of Arabidopsis lyrata (Brassicaceae). American Journal of Botany, Vol. 96. 2009, no. 6, pp. 1129-1137.
  Leinonen, Päivi H.; Sandring, Saskia; Quilot, Bénédicte; Clauss, Maria J.; Mitchell‐Olds, Thomas; Ågren, Jon & Savolainen, Outi
  
• 2009. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the USA, Vol. 106. 2009, no. 13, pp. 5246–5251.
  Guo, Ya-Long; Bechsgaard, Jesper S.; Slotte, Tanja; Neuffer, Barbara; Lascoux, Martin; Weigel, Detlef & Schierup, Mikkel H.
  
• 2010. Molecular evolution within and between self-incompatibility specificities. Molecular Biology and Evolution, Vol. 27. 2010, Issue 1, Pp. 11-20.
  Castric, V.; Bechsgaard, J. S.; Grenier, S.; Noureddine, R.; Schierup, M. H. & Vekemans, X.
  
• 2010. Investigating the effects of topography and clonality on genetic structuring within a large Norwegian population of Arabidopsis lyrata. Annals of Botany, Vol. 106. 2010, Issue 2, Pp. 243-254.
  Lundemo, Sverre; Stenøien, Hans K. & Savolainen, Outi
  
• 2010. The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana. Science, Vol. 327. 2010, no. 5961, pp. 92-94.
  Ossowski, Stephan; Schneeberger, Korbinian; Lucas-Lledó, José Ignacio; Warthmann, Norman; Clark, Richard M.; Shaw, Ruth G.; Weigel, Detlef & Lynch, Michael
  
• 2011. Monitoring population and gene pool dynamics of the annual species Capsella bursa-pastoris (Brassicaceae): a review of relevant species traits and the initiation of a long-term genetic monitoring programme. Biodiversity and Conservation, Vol. 20. 2011, Issue 2, pp. 309-323.
  Neuffer, Barbara; Bernhardt, Karl-Georg; Hurka, Herbert & Kropf, Matthias
  
• 2011. Evolution of the S-locus region in Arabidopsis relatives. Plant Physiology, Vol. 157. 2011, no. 2, pp. 937-946.
  Guo, Ya-Long; Zhao, Xuan; Lanz, Christa & Weigel, Detlef
  
• 2011. Genetics and evolution of the selfing syndrome in the genus Capsella. The Plant Cell, Vol. 23. 2011, no. 9, pp. 3156-3171.
  Sicard, Adrien; Stacey, Nicola; Hermann, Katrin; Dessoly, Jimmy; Neuffer, Barbara; Bäurle, Isabel & Lenhard, Michael
  
• 2011. Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella. Plant Cell, vol. 23. 2011, no. 9, pp. 3156-3171.
  Sicard, Adrien; Stacey, Nicola; Hermann, Katrin; Dessoly, Jimmy; Neuffer, Barbara; Bäurle, Isabel & Lenhard, Michael
  
• 2011. Journey through the past: 150 million years of plant genome evolution. The Plant Journal, Special Issue: The Plant Genome: An Evolutionary View on Structure and Function, Vol. 66. 2011, Issue 1, pp. 58–65.
  Proost, Sebastian; Pattyn, Pedro; Gerats, Tom & Van de Peer, Yves
  
• 2011. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biology and Evolution, Vol. 3. 2011, Pp. 868-880.
  Qiu, Suo; Zeng, Kai; Slotte, Tanja; Wright, Stephen & Charlesworth, Deborah
  
• 2011. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics, Vol. 43. 2011, pp. 476–481.
  Hu, Tina T; Pattyn, Pedro; Bakker, Erica G; Cao, Jun; Cheng, Jan-Fang; Clark, Richard M; Fahlgren, Noah; Fawcett, Jeffrey A; Grimwood, Jane; Gundlach, Heidrun; Haberer, Georg; Hollister, Jesse D; Ossowski, Stephan; Ottilar, Robert P; Salamov, Asaf A; Schneeberger, Korbinian; Spannagl, Manuel; Wang, Xi; Yang, Liang; ... & Guo, Ya-Long
  
• 2012. Disentangling the effects of breakdown of self-incompatibility and transition to selfing in North-American Arabidopsis lyrata. Molecular Ecology, Vol. 21. 2012, Issue 5, pp. 1130–1142.
  HAUDRY, ANNABELLE; ZHA, HONG GUANG; STIFT, MARC & MABLE, BARBARA K.