TRR 235: Emergence of Life: exploring mechanisms with cross-disciplinary experiments
Biology
Chemistry
Geosciences
Final Report Abstract
The emergence of life has been one of the long-lasting scientific and philosophical questions for humankind. Today, life is abundant around us - plants, microbes, larger animals - but this was not the case on early Earth. What processes triggered the emergence of life? We set out with a broad set of experimental questions. What were the conditions on early Earth? Which chemicals could serve as precursors for living systems on Earth and other planets? How did the first genes develop? How could Darwinian evolution emerge? What was the first metabolism? How could life exist robustly? The CRC/TR 235 used bottom-up laboratory experiments combining multiple traditionally standalone disciplines - astrophysics, biochemistry, biophysics, chemistry, geosciences and theory - and expertise in studying the nanoscience of replicating molecules, the early astrochemistry, the systems chemistry of cooperative synthesis, the physics of non-equilibrium systems, the biochemistry of primitive metabolisms and the geochemistry and -physics of early Earth. Highly unexpected results were achieved by the collaborations. Freshly formed hydrothermal vents, solid outflow structures formed from geological fluids, were recreated in lab experiments and shown to accumulate RNA, the first molecule of life. Phosphate, a core component of RNA, could be leached and accumulated from igneous rocks with the pH gradients of a thermal gradient, a process deemed impossible before. Organocatalysts, molecules that act as catalysts as they enter and leave a reaction unchanged, were found to self-select their own polymerization, showing chemical evolution. Complex hydrothermal metabolic reactions could be followed by high-resolution mass spectrometry. The copying of RNA with in situ activation was studied experimentally and results matched the theoretical calculations. Water at the interface to CO2, if heated, selected nucleic acids by length. This lead to a replication-selection cycle, triggering a fast sequence evolution. The same setting could assemble ribozymes from short strands of RNA, creating a role model for the assembly of the ribosome, the starting molecule of the genetic code. Patterns of amino-acid-RNA interactions, important for defining the genetic code was found by sequencing. Protocells were divided by freeze-thaw cycles, coupling replication with cell division. Coacervates, created by the same chemistry that links nucleotides in RNA, selected molecules by their local physical properties. Finally, the consortium organized an exhibition “Simple, complex, alive” at the Deutsches Museum. We pushed the cross-disciplinary boundaries of the field. We narrowed down experimental strategies to recreate the emergence of life in the lab. We now see much clearly how non-equilibrium processes on the early Earth could trigger the powerful principle of Darwinian evolution at the molecular level. The topic will be followed up by the groups of the CRC through different future funding programs.
Link to the final report
https://oa.tib.eu/renate/handle/123456789/17481
Publications
-
Continuous nonenzymatic cross-replication of DNA strands with in situ activated DNA oligonucleotides. Chemical Science, 10(22), 5807-5814.
Edeleva, Evgeniia; Salditt, Annalena; Stamp, Julian; Schwintek, Philipp; Boekhoven, Job & Braun, Dieter
-
Cooperative Ligation Breaks Sequence Symmetry and Stabilizes Early Molecular Replication. Physical Review X, 9(1).
Toyabe, Shoichi & Braun, Dieter
-
Direct Prebiotic Pathway to DNA Nucleosides. Angewandte Chemie International Edition, 58(29), 9944-9947.
Teichert, Jennifer S.; Kruse, Florian M. & Trapp, Oliver
-
Dissipative Self‐Assembly of Peptides. Israel Journal of Chemistry, 59(10), 898-905.
Tena‐Solsona, Marta & Boekhoven, Job
-
Electrification of Experimental Volcanic Jets with Varying Water Content and Temperature. Geophysical Research Letters, 46(20), 11136-11145.
Stern, S.; Cimarelli, C.; Gaudin, D.; Scheu, B. & Dingwell, D.B.
-
Enzyme-free ligation of dimers and trimers to RNA primers. Nucleic Acids Research, 47(8), 3836-3845.
Sosson, Marilyne; Pfeffer, Daniel & Richert, Clemens
-
Fission of Lipid-Vesicles by Membrane Phase Transitions in Thermal Convection. Scientific Reports, 9(1).
Kudella, Patrick W.; Preißinger, Katharina; Morasch, Matthias; Dirscherl, Christina F.; Braun, Dieter; Wixforth, Achim & Westerhausen, Christoph
-
Genetically Encoded Membranes for Bottom‐Up Biology. ChemSystemsChem, 1(4).
Vogele, Kilian; Pirzer, Tobias & Simmel, Friedrich C.
-
Heated gas bubbles enrich, crystallize, dry, phosphorylate and encapsulate prebiotic molecules. Nature Chemistry, 11(9), 779-788.
Morasch, Matthias; Liu, Jonathan; Dirscherl, Christina F.; Ianeselli, Alan; Kühnlein, Alexandra; Le Vay, Kristian; Schwintek, Philipp; Islam, Saidul; Corpinot, Mérina K.; Scheu, Bettina; Dingwell, Donald B.; Schwille, Petra; Mutschler, Hannes; Powner, Matthew W.; Mast, Christof B. & Braun, Dieter
-
Pathway Dependence in the Fuel-Driven Dissipative Self-Assembly of Nanoparticles. Journal of the American Chemical Society, 141(25), 9872-9878.
Grötsch, Raphael K.; Wanzke, Caren; Speckbacher, Maximilian; Angı, Arzu; Rieger, Bernhard & Boekhoven, Job
-
Active coacervate droplets as a model for membraneless organelles and protocells. Nature Communications, 11(1).
Donau, Carsten; Späth, Fabian; Sosson, Marilyne; Kriebisch, Brigitte A. K.; Schnitter, Fabian; Tena-Solsona, Marta; Kang, Hyun-Seo; Salibi, Elia; Sattler, Michael; Mutschler, Hannes & Boekhoven, Job
-
Physiological limits to life in anoxic subseafloor sediment. FEMS Microbiology Reviews, 44(2), 219-231.
Orsi, William D.; Schink, Bernhard; Buckel, Wolfgang & Martin, William F.
-
Prebiotically Plausible RNA Activation Compatible with Ribozyme‐Catalyzed Ligation. Angewandte Chemie International Edition, 60(6), 2952-2957.
Song, Emilie Yeonwha; Jiménez, Eddy Ivanhoe; Lin, Huacan; Le Vay, Kristian; Krishnamurthy, Ramanarayanan & Mutschler, Hannes
-
The Enzyme‐Free Release of Nucleotides from Phosphoramidates Depends Strongly on the Amino Acid. Angewandte Chemie International Edition, 59(45), 20154-20160.
Jovanovic, Dejana; Tremmel, Peter; Pallan, Pradeep S.; Egli, Martin & Richert, Clemens
-
The Future of Origin of Life Research: Bridging Decades-Old Divisions. Life, 10(3), 20.
Preiner, Martina; Asche, Silke; Becker, Sidney; Betts, Holly C.; Boniface, Adrien; Camprubi, Eloi; Chandru, Kuhan; Erastova, Valentina; Garg, Sriram G.; Khawaja, Nozair; Kostyrka, Gladys; Machné, Rainer; Moggioli, Giacomo; Muchowska, Kamila B.; Neukirchen, Sinje; Peter, Benedikt; Pichlhöfer, Edith; Radványi, Ádám; Rossetto, Daniele ... & Xavier, Joana C.
-
Thermal Habitat for RNA Amplification and Accumulation. Physical Review Letters, 125(4).
Salditt, Annalena; Keil, Lorenz M. R.; Horning, David P.; Mast, Christof B.; Joyce, Gerald F. & Braun, Dieter
-
Acid‐Catalyzed RNA‐Oligomerization from 3’,5’‐cGMP. Chemistry – A European Journal, 27(70), 17581-17585.
Wunnava, Sreekar; Dirscherl, Christina F.; Výravský, Jakub; Kovařík, Aleš; Matyášek, Roman; Šponer, Jiří; Braun, Dieter & Šponer, Judit E.
-
Dynamic Exchange of Substituents in a Prebiotic Organocatalyst: Initial Steps towards an Evolutionary System. Angewandte Chemie International Edition, 61(3).
Closs, Anna C.; Bechtel, Maximilian & Trapp, Oliver
-
Enhanced Ribozyme‐Catalyzed Recombination and Oligonucleotide Assembly in Peptide‐RNA Condensates. Angewandte Chemie International Edition, 60(50), 26096-26104.
Le, Vay Kristian; Song, Emilie Yeonwha; Ghosh, Basusree; Tang, T.‐Y. Dora & Mutschler, Hannes
-
Exploring the link between molecular cloud ices and chondritic organic matter in laboratory. Nature Communications, 12(1).
Danger, G.; Vinogradoff, V.; Matzka, M.; Viennet, J.-C.; Remusat, L.; Bernard, S.; Ruf, A.; Le Sergeant d.’Hendecourt, L. & Schmitt-Kopplin, P.
-
Heat flows in rock cracks naturally optimize salt compositions for ribozymes. Nature Chemistry, 13(11), 1038-1045.
Matreux, T.; Le Vay, K.; Schmid, A.; Aikkila, P.; Belohlavek, L.; Çalışkanoğlu, A. Z.; Salibi, E.; Kühnlein, A.; Springsklee, C.; Scheu, B.; Dingwell, D. B.; Braun, D.; Mutschler, H. & Mast, C. B.
-
High CO2 levels drive the TCA cycle backwards towards autotrophy. Nature, 592(7856), 784-788.
Steffens, Lydia; Pettinato, Eugenio; Steiner, Thomas M.; Mall, Achim; König, Simone; Eisenreich, Wolfgang & Berg, Ivan A.
-
Non-equilibrium conditions inside rock pores drive fission, maintenance and selection of coacervate protocells. Nature Chemistry, 14(1), 32-39.
Ianeselli, Alan; Tetiker, Damla; Stein, Julian; Kühnlein, Alexandra; Mast, Christof B.; Braun, Dieter & Dora, Tang T.-Y.
-
Nonenzymatic, Template‐Free Polymerization of 3’,5’ Cyclic Guanosine Monophosphate on Mineral Surfaces. ChemSystemsChem, 3(6).
Šponer, Judit E.; Šponer, Jiří; Výravský, Jakub; Šedo, Ondrej; Zdráhal, Zbyněk; Costanzo, Giovanna; Di Mauro, Ernesto; Wunnava, Sreekar; Braun, Dieter; Matyášek, Roman & Kovařík, Aleš
-
Parasitic behavior in competing chemically fueled reaction cycles. Chemical Science, 12(21), 7554-7560.
Schwarz, Patrick S.; Laha, Sudarshana; Janssen, Jacqueline; Huss, Tabea; Boekhoven, Job & Weber, Christoph A.
-
Self-Assembly of Informational Polymers by Templated Ligation. Physical Review X, 11(3).
Rosenberger, Joachim H.; Göppel, Tobias; Kudella, Patrick W.; Braun, Dieter; Gerland, Ulrich & Altaner, Bernhard
-
Shallow-water hydrothermalism at Milos (Greece): Nature, distribution, heat fluxes and impact on ecosystems. Marine Geology, 438, 106521.
Puzenat, Valentine; Escartín, Javier; Martelat, Jean-Emmanuel; Barreyre, Thibaut; Le Moine Bauer, Sven; Nomikou, Paraskevi; Gracias, Nuno; Allemand, Pascal; Antoniou, Varvara; Coskun, Omer; Garcia, Rafael; Grandjean, Philippe; Jørgensen, Steffen Leth; Magí, Lluís; Mandalakis, Manolis; Orsi, William; Polymenakou, Paraskevi; Schouw, Anders; Vallicrosa, Guillem & Vlasopoulos, Othonas
-
Single nucleotide translation without ribosomes. Nature Chemistry, 13(8), 751-757.
Jash, Biswarup; Tremmel, Peter; Jovanovic, Dejana & Richert, Clemens
-
Structured sequences emerge from random pool when replicated by templated ligation. Proceedings of the National Academy of Sciences, 118(8).
Kudella, Patrick W.; Tkachenko, Alexei V.; Salditt, Annalena; Maslov, Sergei & Braun, Dieter
-
The Abiotic Formation of Pyrrole under Volcanic, Hydrothermal Conditions—An Initial Step towards Life’s First Breath?. Life, 11(9), 980.
Seitz, Christian; Eisenreich, Wolfgang & Huber, Claudia
-
Emergence of Colloidal Patterns in ac Electric Fields. Physical Review Letters, 128(5).
Katzmeier, Florian; Altaner, Bernhard; List, Jonathan; Gerland, Ulrich & Simmel, Friedrich C.
-
Enzyme‐Free Copying of 12 Bases of RNA with Dinucleotides. Angewandte Chemie International Edition, 61(29).
Leveau, Gabrielle; Pfeffer, Daniel; Altaner, Bernhard; Kervio, Eric; Welsch, Franziska; Gerland, Ulrich & Richert, Clemens
-
Iron‐Mediated Peptide Formation in Water and Liquid Sulfur Dioxide under Prebiotically Plausible Conditions**. ChemSystemsChem, 5(2).
Sydow, Constanze; Sauer, Fabian; Siegle, Alexander F. & Trapp, Oliver
-
RNA Oligomerisation without Added Catalyst from 2′,3′‐Cyclic Nucleotides by Drying at Air‐Water Interfaces**. ChemSystemsChem, 5(1).
Dass, Avinash Vicholous; Wunnava, Sreekar; Langlais, Juliette; von der Esch, Beatriz; Krusche, Maik; Ufer, Lennard; Chrisam, Nico; Dubini, Romeo C. A.; Gartner, Florian; Angerpointner, Severin; Dirscherl, Christina F.; Rovó, Petra; Mast, Christof B.; Šponer, Judit E.; Ochsenfeld, Christian; Frey, Erwin & Braun, Dieter
-
Selection of prebiotic oligonucleotides by cyclic phaseseparation
Bartolucci, G., A. Calaça Serrão, P. Schwintek, A. Kühnlein, Y. Rana, P. Janto, D. Hofer, C.B.Mast, D. Braun & C.A. Weber
-
The time complexity of self-assembly. Proceedings of the National Academy of Sciences, 119(4).
Gartner, Florian M.; Graf, Isabella R. & Frey, Erwin
-
Water cycles in a Hadean CO2 atmosphere drive the evolution of long DNA. Nature Physics, 18(5), 579-585.
Ianeselli, Alan; Atienza, Miguel; Kudella, Patrick W.; Gerland, Ulrich; Mast, Christof B. & Braun, Dieter
-
Complex carbonaceous matter in Tissint martian meteorites give insights into the diversity of organic geochemistry on Mars. Science Advances, 9(2).
Schmitt-Kopplin, Philippe; Matzka, Marco; Ruf, Alexander; Menez, Benedicte; Chennaoui, Aoudjehane Hasnaa; Harir, Mourad; Lucio, Marianna; Hertzog, Jasmine; Hertkorn, Norbert; Gougeon, Régis D.; Hoffmann, Victor; Hinman, Nancy W.; Ferrière, Ludovic; Greshake, Ansgar; Gabelica, Zelimir; Trif, László & Steele, Andrew
-
gas-tight shock tube apparatus for laboratory volcanic lightning under varying atmospheric conditions. Volcanica, 6(2), 437-445.
Springsklee, Christina; Scheu, Bettina; Seifert, Christoph; Manga, Michael; Cimarelli, Corrado; Gaudin, Damian; Trapp, Oliver & Dingwell, Donald B.
-
Influence of Silicate Rock Glass Compositions on the Efficacy of Prebiotic RNA Polymerization Reactions: The Case of 3’,5’ Cyclic Guanosine Monophosphate. ChemSystemsChem, 5(5).
Šponer, Judit E.; Kloužek, Jaroslav; Výravský, Jakub; Wunnava, Sreekar; Scheu, Bettina; Braun, Dieter; Mojzsis, Stephen J.; Palacký, Jan; Vorlíčková, Michaela; Šponer, Jiří; Matyášek, Roman & Kovařík, Aleš
-
Microfluidic Quasi-2-Dimensional Alkaline Vent Model to Study Precipitation Morphology, Fluid Flows and Molecule Accumulation. Goldschmidt2023 abstracts. European Association of Geochemistry.
Weingart, Maximilian; Alim, Karen; Chen, Siyu; Donat, Clara; Helmbrecht, Vanessa; Orsi, William & Braun, Dieter
-
Periodic temperature changes drive the proliferation of self-replicating RNAs in vesicle populations. Nature Communications, 14(1).
Salibi, Elia; Peter, Benedikt; Schwille, Petra & Mutschler, Hannes
-
Physical non-equilibria for prebiotic nucleic acid chemistry. Nature Reviews Physics, 5(3), 185-195.
Ianeselli, Alan; Salditt, Annalena; Mast, Christof; Ercolano, Barbara; Kufner, Corinna L.; Scheu, Bettina & Braun, Dieter
-
Reactive phosphorus via simulated lightning discharge: A role for fulgurites in pre-biotic chemistry. Chemical Geology, 620, 121343.
Çalışkanoğlu, A. Zeynep; Dingwell, Donald B.; Cimarelli, Corrado; Camara, Alessandra S.B.; Breitzke, Hergen; Buntkowsky, Gerd; Pasek, Matthew A.; Braun, Dieter; Scheu, Bettina & Molaverdikhani, Karan
-
Ribozyme-mediated RNA synthesis and replication in a model Hadean microenvironment. Nature Communications, 14(1).
Salditt, Annalena; Karr, Leonie; Salibi, Elia; Le Vay, Kristian; Braun, Dieter & Mutschler, Hannes
-
Sequence dependent UV damage of complete pools of oligonucleotides. Scientific Reports, 13(1).
Kufner, Corinna L.; Krebs, Stefan; Fischaleck, Marlis; Philippou-Massier, Julia; Blum, Helmut; Bucher, Dominik B.; Braun, Dieter; Zinth, Wolfgang & Mast, Christof B.
-
Spatiotemporal Propagation of a Minimal Catalytic RNA Network in GUV Protocells by Temperature Cycling and Phase Separation. Angewandte Chemie International Edition, 62(17).
Peter, Benedikt; Levrier, Antoine & Schwille, Petra
-
Synthesis of prebiotic organics from CO2 by catalysis with meteoritic and volcanic particles. Scientific Reports, 13(1).
Peters, Sophia; Semenov, Dmitry A.; Hochleitner, Rupert & Trapp, Oliver
-
Triplet-Encoded Prebiotic RNA Aminoacylation. Journal of the American Chemical Society, 145(29), 15971-15980.
Su, Meng; Schmitt, Christian; Liu, Ziwei; Roberts, Samuel J.; Liu, Kim C.; Röder, Konstantin; Jäschke, Andres; Wales, David J. & Sutherland, John D.
-
White and green rust chimneys accumulate RNA in a ferruginous chemical garden. Geobiology, 21(6), 758-769.
Helmbrecht, Vanessa; Weingart, Maximilian; Klein, Frieder; Braun, Dieter & Orsi, William D.
