Unbiased single-cell spatial transcriptomics

• Applicant: Dr. Nikolaos Karaiskos
• Subject Area: Bioinformatics and Theoretical Biology
• Term: from 2018 to 2022
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 411678873

Final Report Abstract

No abstract available

Publications

• Gene expression cartography. Nature 576, 132–137 (2019)
  Nitzan M, Karaiskos N, Friedman N, Rajewsky N
  (See online at https://doi.org/10.1038/s41586-019-1773-3)
• Kidney single-cell transcriptomes predict spatial cordicomedullary gene expression and tissue osmolarity gradients. JASN 32 (2), 291-306 (2021)
  Hinze C, Karaiskos N, Boltengagen A, Walentin K, Redo K, Himmerkus N, Bleich M, Potter SS, Potter AS, Eckardt K-W, Kocks C, Rajewsky N, Schmidt-Ott KM
  (See online at https://doi.org/10.1681/asn.2020070930)
• NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport. Nat Protoc. 16: 4177–4200 (2021)
  Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M
  (See online at https://doi.org/10.1038/s41596-021-00573-7)