Unbiased single-cell spatial transcriptomics

• Applicant: Dr. Nikolaos Karaiskos
• Subject Area: Bioinformatics and Theoretical Biology
• Term: from 2018 to 2022
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 411678873

No abstract available

Publications

• Gene expression cartography. Nature 576, 132–137 (2019)
  Nitzan, Mor; Karaiskos, Nikos; Friedman, Nir & Rajewsky, Nikolaus
  
• Kidney single-cell transcriptomes predict spatial cordicomedullary gene expression and tissue osmolarity gradients. JASN 32 (2), 291-306 (2021)
  Hinze, Christian; Karaiskos, Nikos; Boltengagen, Anastasiya; Walentin, Katharina; Redo, Klea; Himmerkus, Nina; Bleich, Markus; Potter, S. Steven; Potter, Andrew S.; Eckardt, Kai-Uwe; Kocks, Christine; Rajewsky, Nikolaus & Schmidt-Ott, Kai M.
  
• NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport. Nat Protoc. 16: 4177–4200 (2021)
  Moriel, Noa; Senel, Enes; Friedman, Nir; Rajewsky, Nikolaus; Karaiskos, Nikos & Nitzan, Mor