AAV-based Gene Therapy Mediating RNA Editing as a Treatment for C9ORF72-ALS

• Applicants: Professor Federico Calegari, Ph.D.; Professor Dr. Jared Sterneckert
• Subject Area: Molecular and Cellular Neurology and Neuropathology ; Molecular Biology and Physiology of Neurons and Glial Cells
• Term: from 2020 to 2024
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 439471769

Amyotrophic lateral sclerosis (ALS) is a devastating neurodegenerative disease characterized by the progressive loss of upper and lower motor neurons (MNs). As the number of older Europeans increases, the incidence of ALS cases are expected to significantly increase. New therapeutics are urgently needed. However, developing effective treatments for ALS has been difficult because pathogenesis begins long before patients are diagnosed, ALS disease course changes over time, and human genetics suggests that ALS is a collection of disease subtypes, suggesting that personalized medicine might be necessary. The most common known genetic cause of ALS is a GGGGCC (G4C2) hexanucleotide repeat expansion (HRE) within the first intron of the gene C9ORF72. In addition, HRE in C9ORF72 is the most common cause of frontotemporal dementia. Therefore, therapeutics designed specifically against HRE would benefit a large number of patients. Although antisense oligonucleotides (ASOs) are the most actively investigated therapeutic strategy for C9ORF72-ALS, ASOs target only one RNA strand – typically the sense strand, leaving the antisense RNA transcript, which induces ALS pathology, unaltered. Also, ASOs need to be administered by intrathecal injection every four weeks. This is very invasive, and in ALS patients it can be technically challenging. Moreover, ASOs have been associated with toxicity, including inflammatory effects, nephrotoxicity, and thrombocytopenia. Gene therapeutics using adeno-associated virus (AAV) have shown tremendous promise in pre-clinical and clinical testing for MN diseases. A single administration of AAV to the CNS showed therapeutic effects over 250 days later in mice. Here, we propose developing an AAV therapeutic vector that simultaneously deletes both the sense and antisense HRE-containing RNA transcripts over a long period of time and after only a single injection. We will develop this vector using human MNs differentiated from induced pluripotent stem cells. A mouse model will be used to evaluate efficacy in vivo, and we will specifically test the efficacy of administering before symptom onset, which we believe is when MN degeneration can be best prevented. The DPR protein polyGP, which has already shown significant promise as a C9ORF72-ALS biomarker in patient cerebrospinal fluid, will be monitored via ELISAs for target engagement in our experiments and will be correlated with efficacy. Since AAV is now clinically approved for one MN disorder and multiple companies produce AAV vectors under GMP conditions, our new AAV vectors could be rapidly translated into clinical testing.

• DFG Programme: Research Grants