Reconstruction of the Genealogy of Recombining Viruses using Phylogenetic Networks

• Applicant: Dr. Ingo Bulla
• Subject Area: Bioinformatics and Theoretical Biology
• Term: from 2013 to 2015
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 237440467

• Final Report Year: 2016

No abstract available

Publications

• (2014), “A model-based information sharing protocol for profile hidden Markov models used for HIV-1 recombination detection”, BMC Bioinformatics, 15:205
  Bulla, Ingo; Schultz, Anne-Kathrin; Chesneau, Christophe; Mark, Tanya & Serea, Florin
  
• (2014), “ClassyFlu: Classification of influenza A viruses with discriminatively trained profile-HMMs”, PLOS ONE, 9(1):e84558
  Van der Auwera, Sandra; Bulla, Ingo; Ziller, Mario; Pohlmann, Anne; Harder, Timm & Stanke, Mario
  
• (2014), “Time between transmission events is not directly reflected in a pathogen phylogeny”, Molecular Biology and Evolution, 31(9), 2472-82
  Romero-Severson, Ethan; Skar, Helena; Bulla, Ingo; Albert, Jan & Leitner, Thomas
  
• (2016), “Phylogenetically resolving epidemiologic linkage”, Proceedings of the National Academy of Sciences, 113(10), 2690-2695
  Romero-Severson, Ethan O.; Bulla, Ingo & Leitner, Thomas