Towards a high-resolution picture of the stability of protein deposits and its modulation in neurodegenerative diseases: visualizing the invisible by fluorine NMR dynamics
Biophysics
Final Report Abstract
As the most common cause of dementia, Alzheimer’s disease (AD) imposes growing burden on our ageing societies. The progressive clinical course of AD is preceded by a long prodromal preclinical phase, during which the neuropathological hallmarks of AD, e.g. extracellular deposition of amyloid-β (Aβ) peptide, gradually develop. Several lines of evidence point to the key role of Aβ aggregation as the initial triggering event in AD pathogenesis. A remarkable feature of AD is the high level of heterogeneity in its neuropathological and clinical course, for which the exact underlying molecular factors are not well understood. In this project, first, we developed a new integrative approach combining NMR and other biophysical techniques and provided a detailed picture of dynamics in Aβ monomers, which highlighted the crucial importance of a kinetic balance between various modes of Aβ motions for its aggregation and served as a reference for further mechanistic studies in this project. Second, we provided evidence for the mechanistic role of two short segments of Aβ in its early aggregation, the Gly33-Leu34-Met35 segment in the C-terminal part and Arg5-based salt bridges in the N-terminal part, and suggested them as potential druggable targets in anti-AD drug development. Third, we demonstrated through high-pressure NMR that some mutations in Aβ (E22G, D23N and ΔE22) alter the pressure stability of Aβ fibrils in drastically different ways and proposed “stability variation” as a molecular property potentially contributing to the remarkable neuropathological diversity in familial AD. Fourth, we showed that pressure stability of Aβ fibrils is altered during in vitro ageing and suggested that “stability maturation” of Aβ fibrils should be taken into consideration in development of molecular imaging probes against Aβ fibrils. Fifth, through mathematical modelling, we showed that the coupled Aβ aggregation-inflammation system has a high tendency for sustained oscillations and suggested that such sustained oscillations might mark the transition to a more progressive phase of amyloid pathology in preclinical AD, hence potentially used as an early biomarker of AD. Further mechanistic insight on Aβ aggregation will be provided upon completion of fluorine NMR data analysis. Besides, our project led to some NMR method developments, especially in the areas of quadrupolar, singlet-state and fluorine NMR, which were applied to deciphering peptide, water and ion dynamics and component exchange kinetics in systems undergoing aggregation and phase separation.
Publications
-
Local and Global Dynamics in Intrinsically Disordered Synuclein. Angewandte Chemie International Edition, 57(46), 15262-15266.
Rezaei‐Ghaleh, Nasrollah; Parigi, Giacomo; Soranno, Andrea; Holla, Andrea; Becker, Stefan; Schuler, Benjamin; Luchinat, Claudio & Zweckstetter, Markus
-
A facile oxygen-17 NMR method to determine effective viscosity in dilute, molecularly crowded and confined aqueous media. Chemical Communications, 55(82), 12404–12407.
Rezaei-Ghaleh, Nasrollah; Munari, Francesca; Becker, Stefan; Assfalg, Michael & Griesinger, Christian
-
Lysine/RNA-interactions drive and regulate biomolecular condensation. Nature Communications, 10(1).
Ukmar-Godec, Tina; Hutten, Saskia; Grieshop, Matthew P.; Rezaei-Ghaleh, Nasrollah; Cima-Omori, Maria-Sol; Biernat, Jacek; Mandelkow, Eckhard; Söding, Johannes; Dormann, Dorothee & Zweckstetter, Markus
-
Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation. The Journal of Physical Chemistry Letters, 10(12), 3369-3375.
Rezaei-Ghaleh, Nasrollah; Parigi, Giacomo & Zweckstetter, Markus
-
Biomolecular phase separation through the lens of sodium‐23 NMR. Protein Science, 30(7), 1315-1325.
Fuentes‐Monteverde, Juan Carlos; Becker, Stefan & Rezaei‐Ghaleh, Nasrollah
-
Multiple Protective Roles of Nanoliposome‐Incorporated Baicalein against Alpha‐Synuclein Aggregates. Advanced Functional Materials, 31(7).
Aliakbari, Farhang; Mohammad‐Beigi, Hossein; Abbasi, Shahsanam; Rezaei‐Ghaleh, Nasrollah; Lermyte, Frederik; Parsafar, Soha; Becker, Stefan; Tafreshi, Azita Parvaneh; O.'Connor, Peter B.; Collingwood, Joanna F.; Christiansen, Gunna; Sutherland, Duncan S.; Jensen, Poul Henning; Morshedi, Dina & Otzen, Daniel E.
-
Singlet-filtered NMR spectroscopy. Science Advances, 6(8).
Mamone, Salvatore; Rezaei-Ghaleh, Nasrollah; Opazo, Felipe; Griesinger, Christian & Glöggler, Stefan
-
Combined High-Pressure and Multiquantum NMR and Molecular Simulation Propose a Role for N-Terminal Salt Bridges in Amyloid-Beta. The Journal of Physical Chemistry Letters, 12(40), 9933-9939.
Vemulapalli, Sahithya Phani Babu; Becker, Stefan; Griesinger, Christian & Rezaei-Ghaleh, Nasrollah
-
Early Divergence in Misfolding Pathways of Amyloid‐Beta Peptides. ChemPhysChem, 22(21), 2158-2163.
Mamone, Salvatore; Glöggler, Stefan; Becker, Stefan & Rezaei‐Ghaleh, Nasrollah
-
Dynamical component exchange in a model phase separating system: an NMR-based approach. Physical Chemistry Chemical Physics, 24(10), 6169-6175.
Pantoja, Christian F.; Zweckstetter, Markus & Rezaei-Ghaleh, Nasrollah
-
Metal Binding to Sodium Heparin Monitored by Quadrupolar NMR. International Journal of Molecular Sciences, 23(21), 13185.
Sieme, Daniel; Griesinger, Christian & Rezaei-Ghaleh, Nasrollah
-
Molecular Diffusivity of Click Reaction Components: The Diffusion Enhancement Question. Journal of the American Chemical Society, 144(3), 1380-1388.
Rezaei-Ghaleh, Nasrollah; Agudo-Canalejo, Jaime; Griesinger, Christian & Golestanian, Ramin
-
Polyphenols-Based Nanosheets of Propolis Modulate Cytotoxic Amyloid Fibril Assembly of α-Synuclein. ACS Chemical Neuroscience, 13(22), 3168-3179.
Rafiei, Yasin; Salmani, Bahram; Mirzaei-Behbahani, Behnaz; Taleb, Mahshid; Meratan, Ali Akbar; Ramezani, Mohammad; Nikfarjam, Nasser; Becker, Stefan & Rezaei-Ghaleh, Nasrollah
-
Response to Comment on “Following Molecular Mobility during Chemical Reactions: No Evidence for Active Propulsion” and “Molecular Diffusivity of Click Reaction Components: The Diffusion Enhancement Question”. Journal of the American Chemical Society, 144(30), 13441-13445.
Rezaei-Ghaleh, Nasrollah; Agudo-Canalejo, Jaime; Griesinger, Christian & Golestanian, Ramin
-
The calcium-free form of atorvastatin inhibits amyloid-β(1–42) aggregation in vitro. Journal of Biological Chemistry, 298(3), 101662.
Nedaei, Hadi; Rezaei-Ghaleh, Nasrollah; Giller, Karin; Becker, Stefan; Karami, Leila; Moosavi-Movahedi, Ali Akbar; Griesinger, Christian & Saboury, Ali Akbar
-
Water Dynamics in Highly Concentrated Salt Solutions: A Multi‐Nuclear NMR Approach. ChemistryOpen, 11(6).
Rezaei‐Ghaleh, Nasrollah
-
Autoinhibition in the Signal Transducer CIN85 Modulates B Cell Activation. Journal of the American Chemical Society, 146(1), 399-409.
Sieme, Daniel; Engelke, Michael; Rezaei-Ghaleh, Nasrollah; Becker, Stefan; Wienands, Jürgen & Griesinger, Christian
-
Familial Alzheimer’s Disease-Related Mutations Differentially Alter Stability of Amyloid-Beta Aggregates. The Journal of Physical Chemistry Letters, 14(6), 1427-1435.
Rezaei-Ghaleh, Nasrollah; Amininasab, Mehriar; Giller, Karin & Becker, Stefan
-
Fast Motions Dominate Dynamics of Intrinsically Disordered Tau Protein at High Temperatures. Chemistry – A European Journal, 29(17).
Abyzov, Anton; Mandelkow, Eckhard; Zweckstetter, Markus & Rezaei‐Ghaleh, Nasrollah
-
Maturation of amyloid β fibrils alters their molecular stability. Physical Chemistry Chemical Physics, 25(22), 15099-15103.
Becker, Stefan; Giller, Karin; Sieme, Daniel & Rezaei-Ghaleh, Nasrollah
-
Bifurcations in coupled amyloid-β aggregation-inflammation systems. npj Systems Biology and Applications, 10(1).
Chakrabarti, Kalyan S.; Bakhtiari, Davood & Rezaei-Ghaleh, Nasrollah
-
Large dynamics of a phase separating arginine-glycine-rich domain revealed via nuclear and electron spins. Nature Communications, 15(1).
Sicoli, Giuseppe; Sieme, Daniel; Overkamp, Kerstin; Khalil, Mahdi; Backer, Robin; Griesinger, Christian; Willbold, Dieter & Rezaei-Ghaleh, Nasrollah
-
Mobility of sodium ions in agarose gels probed through combined single- and triple-quantum NMR. Methods, 228, 55-64.
Nimerovsky, Evgeny; Sieme, Daniel & Rezaei-Ghaleh, Nasrollah
-
Water dynamics in eutectic solutions of sodium chloride and magnesium sulfate: implications for life in Europa's subsurface ocean and ice shell. Physical Chemistry Chemical Physics, 26(1), 105-115.
Sieme, Daniel & Rezaei-Ghaleh, Nasrollah
