Evolutionary network analysis based on the transcriptome atlas of Marchantia polymorpha (EvoNet)
Bioinformatics and Theoretical Biology
Final Report Abstract
Parts of the effort are currently already in the publication process. The genome is part of a large scale comparative genome analyses in the pangenome (10.1101/2023.10.27.564390) and under review in Nature Genetics. It is also available as a data publication (10.4119/unibi/2982437). We also established DAP-seq based on the genome which has been used in evolutionary analyses of transcription factor binding (10.1101/2023.08.28.555073) which is currently in revision for resubmission. We are currently deciding whether to publish the transcriptome atlas and the transcription factor analyses separately or whether to repeat the experiments with core funding using a different induction system and publish the atlas and its validation as a unit with likely higher impact.
