Transfer Function Models for Molecular Communication Channels
Final Report Abstract
Molecular communication (MC) is an emerging field of research at the intersection of science and engineering. MC is the prevalent means of communication in natural biological systems, e.g., between a presysynaptic neuron and a postsynaptic neuron in the synaptic cleft or between bacteria during quorum sensing. Engineered MC systems are expected to enable communication between nanomachines and to facilitate interaction with biological systems. This will pave the way for several medical, agricultural, and industrial applications including targeted drug delivery, environmental monitoring and nanoscale quality control. One of the most fascinating envisioned applications of MC is the Internet of BioNanoThings (IoBNT), facilitating detection and treatment of diseases inside the human body based on an in-body network of nanodevices and an external control unit. In MC, information is encoded in the properties of small particles. The development of the underlying communication and information theory and corresponding testbeds for experimental verification are still in their infancy. In this context, powerful and flexible analytical models and fast simulation methods for the spatio-temporal distribution of the information-carrying particles are of paramount importance. On the one hand, such models and methods are needed for the communication- and information-theoretical design and analysis of MC systems, and on the other hand, they are needed to guide the development of experiments. Unfortunately, the existing analytical models for MC systems are restricted to very simple MC channels, often relying on unrealistic simplifying assumptions, and the existing simulation methods are either accurate but slow or fast but not insightful, i.e., they offer only little insight into the impact of the various MC channels. Therefore, this project aimed to develop powerful and flexible analytical models for the spatio-temporal distribution of the information-carrying particles in MC systems based on a transfer function approach. In the course of the project, we were able to develop a framework for the analytical modeling of MC systems based on transfer functions. We were able to apply the approach to derive more realistic and efficient analytical models for a variety of relevant components of MC systems for which only approximate models or no models at all existed. Due to the application-oriented research approach and the publication of our developed models and concepts, the developed modeling approach is also used by other research groups and in follow-up studies. In total, the results of the project have been disseminated in 7 journal, 7 conference, and 1 book publications.
Publications
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Spherical Diffusion Model with Semi-Permeable Boundary: A Transfer Function Approach. ICC 2020 - 2020 IEEE International Conference on Communications (ICC), 1-7. IEEE.
Schafer, Maximilian; Wicke, Wayan; Haselmayr, Wetner; Rabenstein, Rudolf & Schober, Robert
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“A String in a Room: Mixed-dimensional Transfer Function Models for Sound Synthesis,” Proc. 23rd International Conference on Digital Audio Effects (DAFx-20), Vienna, Austria, 2020.
M. Schäfer, R. Rabenstein & S. J. Schlecht
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A Survey of Molecular Communication in Cell Biology: Establishing a New Hierarchy for Interdisciplinary Applications. IEEE Communications Surveys & Tutorials, 23(3), 1494-1545.
Bi, Dadi; Almpanis, Apostolos; Noel, Adam; Deng, Yansha & Schober, Robert
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Channel Modeling for Drug Carrier Matrices. 2021 IEEE Global Communications Conference (GLOBECOM), 1-6. IEEE.
Schafer, Maximilian; Salinas, Yolanda; Ruderer, Alexander; Enzenhofer, Franz; Bruggemann, Oliver; Schober, Robert & Haselmayr, Werner
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Transfer Function Models for Cylindrical MC Channels With Diffusion and Laminar Flow. IEEE Transactions on Molecular, Biological and Multi-Scale Communications, 7(4), 271-287.
Schafer, Maximilian; Wicke, Wayan; Brand, Lukas; Rabenstein, Rudolf & Schober, Robert
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Channel Responses for the Molecule Release From Spherical Homogeneous Matrix Carriers. IEEE Transactions on Molecular, Biological and Multi-Scale Communications, 8(4), 212-228.
Schafer, Maximilian; Salinas, Yolanda; Ruderer, Alexander; Enzenhofer, Franz; Bruggemann, Oliver; Martinez-Manez, Ramon; Rabenstein, Rudolf; Schober, Robert & Haselmayr, Werner
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Controlled signaling and transmitter replenishment for MC with functionalized nanoparticles. Proceedings of the 9th ACM International Conference on Nanoscale Computing and Communication, 1-7. ACM.
Schäfer, Maximilian; Brand, Lukas; Lotter, Sebastian; Büyükoglu, Atakan; Enzenhofer, Franz; Haselmayr, Werner; Castiglione, Kathrin; Appelhans, Dietmar & Schober, Robert
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Signal Reception With Generic Three-State Receptors in Synaptic MC. GLOBECOM 2022 - 2022 IEEE Global Communications Conference, 4529-4534. IEEE.
Lotter, Sebastian; Barros, Michael T.; Schober, Robert & Schafer, Maximilian
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“Physical Modeling using Recurrent Neural Networks with fast Convolutional Layers,” Proc. 25th International Conference on Digital Audio Effects (DAFx20in22), Vienna, Austria, 2022
J. D. Parker, S. J. Schlecht, R. Rabenstein & M. Schäfer
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Analysis of MC Systems Employing Receivers Covered by Heterogeneous Receptors. IEEE Transactions on Molecular, Biological and Multi-Scale Communications, 9(1), 63-78.
Huang, Xinyu; Fang, Yuting; Johnston, Stuart T.; Faria, Matthew; Yang, Nan & Schober, Robert
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Area Rate Efficiency in Multi-Link Molecular Communications. IEEE Transactions on Molecular, Biological and Multi-Scale Communications, 9(4), 391-407.
Brand, Lukas; Lotter, Sebastian; Jamali, Vahid; Schober, Robert & Schäfer, Maximilian
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Chemical Reactions-Based Detection Mechanism for Molecular Communications. IEEE Transactions on Molecular, Biological and Multi-Scale Communications, 9(1), 49-62.
Cao, Trang Ngoc; Jamali, Vahid; Wicke, Wayan; Zlatanov, Nikola; Yeoh, Phee Lep; Evans, Jamie & Schober, Robert
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Multidimensional Signals and Systems. Springer International Publishing.
Rabenstein, Rudolf & Schäfer, Maximilian
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Olfaction-Inspired MCs: Molecule Mixture Shift Keying and Cross-Reactive Receptor Arrays. IEEE Transactions on Communications, 71(4), 1894-1911.
Jamali, Vahid; Loos, Helene M.; Buettner, Andrea; Schober, Robert & Vincent, Poor H.
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Stochastic Chemical Reaction Networks for MAP Detection in Cellular Receivers. Proceedings of the 10th ACM International Conference on Nanoscale Computing and Communication, 65-71. ACM.
Heinlein, Bastian; Brand, Lukas; Egan, Malcolm; Schäfer, Maximilian; Schober, Robert & Lotter, Sebastian
