Biometric tools for microarrays

• Applicant: Professor Dr. Hans-Peter Piepho
• Subject Area: Plant Breeding and Plant Pathology
• Term: from 2003 to 2010
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 5403793

• Final Report Year: 2010

No abstract available

Publications

• 2005. Is dominance an artefact governed by the choice of scale? Euphytica, Vol. 145. 2005, Issue 1, pp 113-121.
  Keller, Barbara & Piepho, Hans-Peter
  
• 2005. Optimal allocation in designs for assessing heterosis from cDNA gene expression data. Genetics, vol. 171. 2005, no. 1, pp. 359-364.
  Piepho, Hans-Peter
  
• 2005. Simultaneous confidence intervals for two estimable functions and their ratio under a linear model. The American Statistician, Vol. 59. 2005, No. 4, pp. 292-300.
  Piepho, Hans-Peter & Emrich, Katharina
  
• 2006. Manifestation of heterosis during early maize (Zea mays L.) root development. Theoretical and Applied Genetics, Vol. 112. 2006, Issue 3, pp. 421-429.
  Hoecker, Nadine; Keller, Barbara; Piepho, Hans-Peter & Hochholdinger, Frank
  
• 2006. Combining signals from spotted cDNA microarrays obtained at different scanning intensities. Bioinformatics, Vol. 22.2006, Issue 7, Pp. 802-807.
  Piepho, H. P.; Keller, B.; Hoecker, N. & Hochholdinger, F.
  
• 2006. ZmGrp3: identification of a novel marker for root initiation in maize and development of a robust assay to quantify allele-specific contribution to gene expression in hybrids. Theoretical and Applied Genetics, Vol. 113. 2006, Issue 7, pp. 1305-1315.
  Woll, Katrin; Dressel, Angela; Sakai, Hajime; Piepho, Hans-Peter & Hochholdinger, Frank
  
• 2007. Comparative expression profiling in meristems of inbred – hybrid triplets of maize. Plant Molecular Biology, Vol. 63. 2007, Issue 1, pp 21-34.
  Użarowska, Anna; Keller, Barbara; Piepho, Hans-Peter; Schwarz, Gerhard; Ingvardsen, Christina; Wenzel, Gerhard & Lübberstedt, Thomas
  
• 2007. Heterosis for biomass-related traits in Arabidopsis investigated by QTL analysis of the triple test cross design with recombinant inbred lines. Genetics, Vol. 177. 2007, no. 3, pp. 1839-1850.
  Kusterer, Barbara; Piepho, Hans-Peter; Utz, H. Friedrich; Schön, Chris C.; Muminovic, Jasmina; Meyer, Rhonda C.; Altmann, Thomas & Melchinger, Albrecht E.
  
• 2007. Prediction of single-cross hybrid performance in maize using haplotype blocks associated with QTL for grain yield. Theoretical and Applied Genetics, Vol. 114.2007, Issue 8, pp 1345-1355.
  Schrag, Tobias A.; Maurer, Hans Peter; Melchinger, Albrecht E.; Piepho, Hans-Peter; Peleman, Johan & Frisch, Matthias
  
• 2008. Analysis of nonadditive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics, Special Issue: Focus on imaging mass sprectrometry, Vol. 8. 2008, Issue 18, pp. 3882–3894.
  Hoecker, Nadine; Lamkemeyer, Tobias; Sarholz, Barbara; Paschold, Anja; Fladerer, Claudia; Madlung, Johannes; Wurster, Karl; Stahl, Mark; Piepho, Hans‐Peter; Nordheim, Alfred & Hochholdinger, Frank
  
• 2008. Comparison of maize (Zea mays) hybrid and parental inbred line primary root transcriptomes suggests organ specific patterns of non-additive gene expression and conserved expression trends between different hybrids in a subset of genes. Genetics, Vol. 179. 2008, no. 3, pp. 1275-1283.
  Hoecker, Nadine; Keller, Barbara; Muthreich, Nils; Chollet, Didier; Descombes, Patrick; Piepho, Hans-Peter & Hochholdinger, Frank
  
• 2008. Trends in genetic variance components during 30 years of hybrid maize breeding at the University of Hohenheim. Plant Breeding, Vol. 127. 2008, Issue 5, pp. 446–451.
  Fischer, S.; Möhring, J.; Schön, C. C.; Piepho, H.‐P.; Klein, D.; Schipprack, W.; Utz, H. F.; Melchinger, A. E. & Reif, J. C.
  
• 2009. Molecular marker-based prediction of hybrid performance in maize using unbalanced data from multiple experiments with factorial crosses. Theoretical and Applied Genetics, Vol. 118. 2009, Issue 4, pp. 741-751.
  Schrag, Tobias A.; Möhring, Jens; Maurer, Hans Peter; Dhillon, Baldev S.; Melchinger, Albrecht E.; Piepho, Hans-Peter; Sørensen, Anker P. & Frisch, Matthias
  
• 2009. Impact of genetic divergence on the ratio of variance due to specific versus general combining ability in winter triticale. Crop Science, Vol. 49.2009, No. 6, pp. 2119-2122.
  Fischer, S.; Möhring, J.; Maurer, H.P.; Piepho, H.‐P.; Thiemt, E.‐M.; Schön, C.C.; Melchinger, A.E. & Reif, J.C.
  
• 2009. Unravelling epistasis with triple testcross progenies of near isogenic lines. Genetics, Vol. 181. 2009, no. 1, pp. 247-257.
  Reif, Jochen C.; Kusterer, Barbara; Piepho, Hans-Peter; Meyer, Rhonda C.; Altmann, Thomas; Schön, Chris C. & Melchinger, Albrecht E.
  
• 2010. Heterosis in early seed development: a comparative study of F1 embryo and endosperm tissues six days after fertilization. Theoretical and Applied Genetics, Vol. 120.2010, Issue 2, pp. 389-400.
  Jahnke, Stephanie; Sarholz, Barbara; Thiemann, Alexander; Kühr, Vera; Gutiérrez-Marcos, José F.; Geiger, Hartwig H.; Piepho, Hans-Peter & Scholten, Stefan
  
• 2010. Molecular marker assisted broadening of the Central European heterotic groups in rye with Eastern European germplasm. Theoretical and Applied Genetics, Vol. 120. 2010, Issue 2, pp. 291-299.
  Fischer, Sandra; Melchinger, A. E.; Korzun, V.; Wilde, P.; Schmiedchen, B.; Möhring, J.; Piepho, H.-P.; Dhillon, B. S.; Würschum, T. & Reif, J. C.
  
• 2010. Development of heterotic groups in triticale. Crop Science, Vol. 50. 2010, Issue 2, pp. 584-590.
  Fischer, S.; Maurer, H. P.; Würschum, T.; Möhring, J.; Piepho, H.‐P.; Schön, C. C.; Thiemt, E.‐M.; Dhillon, B. S.; Weissmann, E. A.; Melchinger, A. E. & Reif, J. C.