MicroRNAs und epitheliale-mesenchymale Interaktion im Kontext einer Lungenfibrose
Zusammenfassung der Projektergebnisse
Idiopathic Pulmonary Fibrosis (IPF), the most common and lethal interstitial lung disease of unknown etiology, is a highly morbid progressive and irreversible disorder. IPF is a disease associated with aging and as such its incidence is anticipated to gradually increase as the proportion of the population of older adults increases. While different treatments are available to manage the disorder (ie: nintedanib and perfenidone) and several newer therapeutic options are being studied, there is no cure for IPF. Ultimately, some affected individuals will require a lung transplant. In this context, there is an urgent need for a better understanding of the underlying cellular and molecular mechanisms responsible for IPF. The pathogenesis of IPF is complex and largely unknown. Current hypotheses suggest that microrepetitive injury of unknown origin to pulmonary epithelial cells in the aging lung results in ineffective repair with subsequent fibrogenesis. Myofibroblasts (MYFs) appear as the main final pathological actor, notably by secreting important amount of Extracellular Matrix components thus promoting lung tissue stiffening. Once the MYF focus is initiated, complex epithelial–mesenchymal interactions including direct contacts and soluble mediators contribute to disease progression. Multiple biological pathways, often involved in lung development have been reported, including TGF-beta, suggesting that embryonic signaling pathways involved in epithelium/ mesenchymal communication and epithelial cell plasticity are aberrantly reactivated in IPF. Recent evidence from our teams has emphasized the roles played by microRNAs (miRNAs) in regulating these signaling pathways in lung mesenchyme during development or during the fibrogenic response to tissue injury. The main objective of the FIBROMIRs project was to investigate the role of specific FibromiRs during both lung fibrosis formation and resolution using in vivo loss of function approaches, to characterize their targets and to evaluate the therapeutic value of inhibitors in a preclinical model of lung fibrosis. The strength of the project relies on the state-of the art investigation of lung phenotype in lung fibrosis model including lineage-tracing approaches, miRNA target identification using a combination of experimental and in silico approaches, access to patient samples and validated preclinical mouse / cell models as well as genomics approaches (including single-cell technologies). The project is divided into three scientific Aims: i) to investigate the expression of miRNAs at different stages of fibrosis formation and resolution in mouse models as well as in fibroblasts subpopulations purified from fibrotic mice or IPF lungs and stimulated with pro- or anti-fibrotic treatments ; ii) to characterize the precise function of these miRNAs in lung fibrogenesis and fibrosis resolution using in vivo loss of function approaches and single cell transcriptomics ; iii) to determine the therapeutic value of targeting these miRNAs in lung fibrosis preclinical model as well as on the phenotype of IPF lung-derived fibroblasts. We have notably identified a cluster of three profibrotic mature miRNAs, which influence the TGF-β signaling leading to MYF activation. A pre-clinical study using a lung fibrosis mouse model has demonstrated the anti-fibrotic potential of different strategies aiming at interfering with this cluster or with these individual “FibromiRs”. Altogether, these results provide preclinical proof-of-concept for FibromiRs targeting as a new approach to treat lethal pulmonary fibrosis. These data have been strengthened in IPF patients-derived fibroblasts with these anti-FibromiRs showing reduced basal and TGF-β-induced expression levels of fibrotic markers.
Projektbezogene Publikationen (Auswahl)
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A critical role for miR-142 in alveolar epithelial lineage formation in mouse lung development. Cellular and Molecular Life Sciences, 76(14), 2817-2832.
Shrestha, Amit; Carraro, Gianni; Nottet, Nicolas; Vazquez-Armendariz, Ana Ivonne; Herold, Susanne; Cordero, Julio; Singh, Indrabahadur; Wilhelm, Jochen; Barreto, Guillermo; Morty, Rory; El Agha, Elie; Mari, Bernard; Chen, Chengshui; Zhang, Jin-San; Chao, Cho-Ming & Bellusci, Saverio
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La fonction d’un long ARN non codant décodée dans la fibrose pulmonaire idiopathique. médecine/sciences, 35(10), 739-742.
Savary, Grégoire; Pottier, Nicolas; Mari, Bernard & Cauffiez, Christelle
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Metformin induces lipogenic differentiation in myofibroblasts to reverse lung fibrosis. Nature Communications, 10(1).
Kheirollahi, Vahid; Wasnick, Roxana M.; Biasin, Valentina; Vazquez-Armendariz, Ana Ivonne; Chu, Xuran; Moiseenko, Alena; Weiss, Astrid; Wilhelm, Jochen; Zhang, Jin-San; Kwapiszewska, Grazyna; Herold, Susanne; Schermuly, Ralph T.; Mari, Bernard; Li, Xiaokun; Seeger, Werner; Günther, Andreas; Bellusci, Saverio & El, Agha Elie
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The Long Noncoding RNA DNM3OS Is a Reservoir of FibromiRs with Major Functions in Lung Fibroblast Response to TGF-β and Pulmonary Fibrosis. American Journal of Respiratory and Critical Care Medicine, 200(2), 184-198.
Savary, Grégoire; Dewaeles, Edmone; Diazzi, Serena; Buscot, Matthieu; Nottet, Nicolas; Fassy, Julien; Courcot, Elisabeth; Henaoui, Imène-Sarah; Lemaire, Julie; Martis, Nihal; Van der Hauwaert, Cynthia; Pons, Nicolas; Magnone, Virginie; Leroy, Sylvie; Hofman, Véronique; Plantier, Laurent; Lebrigand, Kevin; Paquet, Agnès; Lino, Cardenas Christian L. ... & Pottier, Nicolas
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Identification of a Repair-Supportive Mesenchymal Cell Population during Airway Epithelial Regeneration. Cell Reports, 33(12), 108549.
Moiseenko, Alena; Vazquez-Armendariz, Ana Ivonne; Kheirollahi, Vahid; Chu, Xuran; Tata, Aleksandra; Rivetti, Stefano; Günther, Stefan; Lebrigand, Kevin; Herold, Susanne; Braun, Thomas; Mari, Bernard; De Langhe, Stijn; Kwapiszewska, Grazyna; Günther, Andreas; Chen, Chengshui; Seeger, Werner; Tata, Purushothama Rao; Zhang, Jin-San; Bellusci, Saverio & El Agha, Elie
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Non-Coding RNAs as Key Regulators of Fibrogenic Processes: Therapeutic Applications for Fibrotic Diseases and Cancers. Invited speaker (séminar, webinar). Lady Davis Institute for Medical research, Mc Gill University, Montréal, Canada. Dec.
Mari B.
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The FibromiR miR-214-3p Is Upregulated in Duchenne Muscular Dystrophy and Promotes Differentiation of Human Fibro-Adipogenic Muscle Progenitors. Cells, 10(7), 1832.
Arrighi, Nicole; Moratal, Claudine; Savary, Grégoire; Fassy, Julien; Nottet, Nicolas; Pons, Nicolas; Clément, Noémie; Fellah, Sandy; Larrue, Romain; Magnone, Virginie; Lebrigand, Kevin; Pottier, Nicolas; Dechesne, Claude; Vassaux, Georges; Dani, Christian; Peraldi, Pascal & Mari, Bernard
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The miR-143/145 cluster promotes mesenchymal phenotypic plasticity associated with resistance to targeted therapies in melanoma. Noncoding RNA World: From Mechanism to Therapy 21–23 Jul 2021, VIRTUAL, International. Selected oral presentation for S. Diazzi.
Diazzi S., Baeri A., Fassy J., Lecacheur M., Girard C., Lefevre L., Lacoux C., Irondelle M., Mounier C., Truchi M., Couralet M., Carminati A., Berestjuk I., Larbret F., Vassaux G., Deckert M., Tartare-Deckert S. & Mari B.
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A role for metformin in the treatment of Dupuytren disease?. Biomedicine & Pharmacotherapy, 150, 112930.
Baeri, Alberto; Levraut, Michaël; Diazzi, Serena; Camuzard, Olivier; Cegarra-Escolano, Marianne; Ploumellec, Marie-Anne; Balaguer, Thierry; Fassy, Julien; Rezzonico, Roger; Bellusci, Saverio; Mari, Bernard & Vassaux, Georges
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Blockade of the pro‐fibrotic reaction mediated by the miR‐143/‐145 cluster enhances the responses to targeted therapy in melanoma. EMBO Molecular Medicine, 14(3).
Diazzi, Serena; Baeri, Alberto; Fassy, Julien; Lecacheur, Margaux; Marin‐Bejar, Oskar; Girard, Christophe A.; Lefevre, Lauren; Lacoux, Caroline; Irondelle, Marie; Mounier, Carine; Truchi, Marin; Couralet, Marie; Ohanna, Mickael; Carminati, Alexandrine; Berestjuk, Ilona; Larbret, Frederic; Gilot, David; Vassaux, Georges; Marine, Jean‐Christophe ... & Tartare‐Deckert, Sophie
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GLI1+ cells are a source of repair-supportive mesenchymal cells (RSMCs) during airway epithelial regeneration. Cellular and Molecular Life Sciences, 79(11).
Chu, Xuran; Lingampally, Arun; Moiseenko, Alena; Kheirollahi, Vahid; Vazquez-Armendariz, Ana Ivonne; Koepke, Janine; Khadim, Ali; Kiliaris, Georgios; Shahriari, Felordi Mahtab; Zabihi, Mahsa; Shalashova, Irina; Alexopoulos, Ioannis; Günther, Stefan; Lebrigand, Kevin; Truchi, Marin; Günther, Andreas; Braun, Thomas; Mari, Bernard; Samakovlis, Christos ... & El, Agha Elie
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Pervasive role of the long noncoding RNA DNM3OS in development and diseases. WIREs RNA, 14(2).
Fellah, Sandy; Larrue, Romain; Truchi, Marin; Vassaux, Georges; Mari, Bernard; Cauffiez, Christelle & Pottier, Nicolas
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Single-cell RNA-seq characterization of lung fibrosis resolution reveals a delayed capillary endothelial signature associated with alveolar regeneration in aged mice. Journées de Recherche Respiratoire (J2R) Reims 2022, 14-15 octobre 2022. Selected oral communication.
Truchi, M.
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Targeting non-coding RNAs in fibroproliferative diseases: the example of DNM3OS. 23 juin 2022, 8th Advanced Summer School - Interrogations at the biointerface : Fibrosis from mechanisms to the clinics, University of Porto.
Cauffiez C.
