Project Details
TRR 353: Regulation of cell death decisions
Subject Area
Biology
Medicine
Medicine
Term
since 2023
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 471011418
The death of individual cells is a frequent event in a mammalian organism, and aberrations in cell death may have severe consequences to human health. In many, probably most instances, cell death is regulated, i.e. occurs as the result of cell-intrinsic signaling. The best-investigated form of regulated cell death, apoptosis, has been known for about 50 years. Additional, distinct cell death modalities have been discovered more recently, including necroptosis, pyroptosis, ferroptosis and oxeiptosis. A multitude of signaling steps in cell death processes have been described. However, with the multitude of different cell types investigated, with the intersection of cell death pathways with other signal transduction events and the separate but similar activities of cell death signaling components, it has been impossible to date to derive a comprehensive conceptual or mechanistic picture of cell death in the human body. We believe that a critical issue on the way to understanding cell death is to appreciate how a cell makes the decision to die. This decision has a number of levels, and two important aspects are the molecular decision to undergo a specific form of cell death, and the decision to make the choice of cell death modality. These two key points will form the focus of this program. In area A, we will endeavor to understand the decision to die. We define separate starting points where this decision may originate: the decision may be made at the level of stress integration by a cell, of signal integration by identified signaling hubs, or of terminal execution of cell death. Projects will investigate for instance signals through death receptors, signals generated by infection with exemplary pathogens, or signals generated by multi-functional transcription factors. Decisions by signaling hubs, such as the death-inducing signaling complex at membrane receptors and the mitochondrial BCL-2 family platform, will be interrogated, as will be cell death execution by membrane pores. The projects will tackle the question of the choice of cell death modality. Even identical stimuli may trigger different forms of cell death. How this decision is made is almost entirely unclear. The projects will investigate for example the cell type dependency of this decision, the role of subcellular origin of the signal and of post-translational modifications of key signaling molecules and hubs. The scientific spectrum reaches from basic biophysical questions to clinical application. The individual projects achieve coherence – in addition to the two main conceptual questions - through the focus on a limited number of cell death modalities and on common signaling molecules and hubs. Two service projects support all scientific projects. The work of this consortium will contribute to establishing fundamental principles of cell death decisions in basic biology and human pathology.
DFG Programme
CRC/Transregios
Current projects
- A01 - Apoptosis and survival in response to TRAIL signaling in human B cell homeostasis (Project Head Rizzi, Marta )
- A02 - Microbial regulation of cell death induction in the intestinal tract (Project Head Yabal, Monica )
- A03 - Determinants of mitochondrial cell death in virus-infected hepatocytes (Project Head Wohlleber, Dirk )
- A05 - Dissecting the basis of the cell death decisions mediated by p53 mutants (Project Heads Amelio, Ivano ; Gruber, Andreas )
- A06 - Investigating cell type-specific death-survival decisions imposed by constitutively active RAS signaling (Project Head Erlacher, Miriam )
- A07 - Studying crosstalk dynamics of signaling complexes in extrinsic and intrinsic cell death pathways by MS-based proteomics (Project Heads Brunner, Thomas ; Stengel, Florian )
- A08 - Large BCL-2-family protein complexes on the outer mitochondrial membrane and their role in the decision to undergo apoptosis (Project Head Häcker, Georg )
- A09 - Decision between local mitophagy and neuronal cell death (Project Head Harbauer, Angelika )
- A10 - Death pores: decision-making at the execution step of regulated necrosis (Project Head Garcia Sáez, Ana Jesús )
- B01 - Host cell decisions between apoptosis, necroptosis and survival after infections with Herpes simplex virus-1 (HSV-1) (Project Head Borner, Christoph )
- B02 - The role of RIP kinase 1 in the decision of apoptosis and pyroptosis induction during intracellular bacterial infection (Project Head Ebert, Gregor )
- B03 - The role of SPATA2 for the decision between cell death and survival (Project Head Maurer, Ulrich )
- B04 - Decisive factors to induce cell death via oxeiptosis and the relationship to other forms of regulated cell death (Project Head Pichlmair, Andreas )
- B05 - Oxidative cell death decisions in response to localized peroxide challenges (Project Head Conrad, Marcus )
- B06 - Studying death decision-making between ferroptotic and apoptotic cell death (Project Head Morrison, Markus )
- B07 - Metabolic factors controlling neuronal cell death decisions (Project Head Leist, Marcel )
- B08 - TNF receptor family signaling in modulating decision processes in apoptotic and necrotic liver cell death (Project Head Brunner, Thomas )
- MGK - Death Decisions - Integrated Research Training Group (Project Heads Amelio, Ivano ; Harbauer, Angelika ; Rizzi, Marta )
- SP01 - Global and targeted proteomics in cell death (Project Head Mergner, Julia )
- SP02 - Bioinformatics unit for the analysis and integration of high-throughput data on cell death decisions (Project Head Börries, Melanie )
- Z - Central tasks of the TRR 353 (Project Head Brunner, Thomas )
Applicant Institution
Universität Konstanz
Co-Applicant Institution
Albert-Ludwigs-Universität Freiburg; Technische Universität München (TUM)
Partner Organisation
Fonds zur Förderung der wissenschaftlichen Forschung (FWF)
Participating University
Medizinische Universität Innsbruck; Universität Stuttgart; Universität zu Köln
Participating Institution
Helmholtz Zentrum München
Deutsches Forschungszentrum für Gesundheit und Umwelt; Max-Planck-Institut für biologische Intelligenz
Deutsches Forschungszentrum für Gesundheit und Umwelt; Max-Planck-Institut für biologische Intelligenz
Spokesperson
Professor Dr. Thomas Brunner